Plugin Catalog

Plugins

Browse available plugins and every action they expose in Adagio. Search by plugin name, action title, action id, or description using the same matching logic as the workspace action tray.

alignment

De novo multiple sequence alignment with MAFFT

mafft

Perform de novo multiple sequence alignment using MAFFT.

alignment

Add sequences to multiple sequence alignment with MAFFT.

mafft-add

Add new sequences to an existing alignment with MAFFT.

alignment

Positional conservation and gap filtering.

mask

Mask (i.e., filter) unconserved and highly gapped columns from an alignment. Default min_conservation was chosen to reproduce the mask presented in Lane (1991).

amrfinderplus

Annotate MAGs or contigs with AMRFinderPlus.

-annotate

Annotate MAGs or contigs with antimicrobial resistance genes with AMRFinderPlus. Check https://github.com/ncbi/amr/wiki for documentation.

amrfinderplus

Annotate MAGs or contigs with AMRFinderPlus.

annotate

Annotate MAGs or contigs with antimicrobial resistance genes with AMRFinderPlus. Check https://github.com/ncbi/amr/wiki for documentation.

amrfinderplus

Collate annotations.

collate-amrfinderplus-annotations

Takes a collection of GenomeData[AMRFinderPlusAnnotations] and collates them into a single artifact.

amrfinderplus

Gene per contig frequency table

create-feature-table

Create a gene per contig frequency table from AMRFinderPlus annotations.

amrfinderplus

Download AMRFinderPlus database.

fetch-amrfinderplus-db

Download the latest version of the AMRFinderPlus database.

Showing 1 to 8 of 346 results

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